Miniaturizing, Modifying, and Magnifying Nature's Proteins with Raygun
Kapil Devkota, Daichi Shonai, Joey Mao, Young Su Ko*, Wei Wang, Scott Soderling, Rohit Singh.
bioRxiv preprint, 2025.
10.1101/2024.08.13.607858
/me
i am a third year molecular biophysics phd student working in the wei wang lab at ucsd. read more about me here.
i am interested in deep learning for protein-protein interactions, protein language models, and ml-guided antibody engineering.
before ucsd, i studied chemistry at pomona college with professor roberto garza-lopez.
i also like making pourovers, studying japanese, and just recently got into photography.
/research
Benchmarking text-integrated protein language model embeddings and embedding fusion on diverse downstream tasks
Young Su Ko*, Jonathan Parkinson, Wei Wang.
bioRxiv preprint, 2024.
10.1101/2024.08.24.609531
TUnA: an uncertainty-aware transformer model for sequence-based protein–protein interaction prediction
Young Su Ko*, Jonathan Parkinson, Cong Liu, Wei Wang.
Briefings in Bioinformatics, 2024.
10.1093/bib/bbae359